NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211638_10087769

Scaffold Ga0211638_10087769


Overview

Basic Information
Taxon OID3300020448 Open in IMG/M
Scaffold IDGa0211638_10087769 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1379
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.24Long. (o)-129.4851Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070206Metagenome123N
F074982Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0211638_100877692F074982AGGMTVIKRTGYLTTNNCDAMVAALPTLPDAAGKEYRNSDAGGNQVSSYKILRYYSYPESLKTAWKTYITSEVLSSYLVSTFMKIPANTGILYPTTPSDPAKLNMNEPVRAIGSFLSISLNDGNHLILNGTKYNVDKGDALLFDGTYTYETETSTQDNLWNVNMVPTWKLATYGA
Ga0211638_100877693F070206AGGMYPKQFDEILSQENVEQDQTLIFNKLSGALVAKMIGSHLDKVNTKYCKGKIETYNPETHEYVGDFDSGSVQSKATRPRIASEIDLDETAGIHIRKKYNYHHQLNHVIDMMKLLLDASSLNDEQKASFNAMKEYIDEIRDLNGKYKDSYQNDPNWTYKPKETVRDDINAKMAGGISEEVKSERDLSGINMITDR
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