NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211638_10545927

Scaffold Ga0211638_10545927


Overview

Basic Information
Taxon OID3300020448 Open in IMG/M
Scaffold IDGa0211638_10545927 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)546
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.24Long. (o)-129.4851Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001419Metagenome / Metatranscriptome698Y
F002883Metagenome / Metatranscriptome523Y
F053343Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0211638_105459271F053343N/ARWWDSKRSGTNLPRQVGLGGYNETIKRTTFHSLHHLFNLFIMNPQAHRSTDELKAIVKALSKLRVLNTPEEDQRLFECEEELRKRKREDDFINAHFQVITY
Ga0211638_105459272F002883N/AMSTLHHEDMLLEIFDEVQEAFPYLDEEKQIEIANNRFQDLCQ
Ga0211638_105459273F001419AGGAMPVMYEFDGYEEILKCYEGVTDQHASTSFEVGLMNDLYY
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