Scaffold Ga0211642_10224612

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211642_10224612

Scaffold Ga0211642_10224612

Overview

Basic Information
Taxon OID	3300020449 Open in IMG/M
Scaffold ID	Ga0211642_10224612 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	809
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_110
Coordinates	Lat. (^o)	-1.8191	Long. (^o)	-84.6284	Alt. (m)		Depth (m)	380
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057688	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211642_102246122	F057688	GAGG	MKNNLLKAHYPSNTIFKQHFIIVGYEFGKKLEGELHKTVDIVCDCLHPDNTVDPRIEKLITKSELQELMDNQFMKRDGDQYIANPLLIYCVDDDYFLDEKRYAAQIKAAKLYYGIKR

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