NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211641_10002277

Scaffold Ga0211641_10002277


Overview

Basic Information
Taxon OID3300020450 Open in IMG/M
Scaffold IDGa0211641_10002277 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12552
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (93.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9554Long. (o)-100.6925Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010471Metagenome303Y
F020815Metagenome222N
F028349Metagenome / Metatranscriptome192Y
F067202Metagenome126Y
F090997Metagenome108Y
F094531Metagenome / Metatranscriptome106N
F096197Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0211641_1000227715F096197AGGAGVTNFTKTQLKNLRAEMQSLLLAHPFEETIDIPIDKISIDSCNYNGGEATYKVRVLLDGAETKEQKDLTQMASMFNLDTTKIKNYVDHKSVQYRMSLVGYKTKARKMPWIAQDLLSGNEYKLTNQQARQWFMKTEEIVS
Ga0211641_1000227716F094531AGGAGMITEDAIPAYNKQFKQLVGAKILDFKMQQCEFDPHQYWPTFKMKLASDTFSLVLSQDEEGNGGGFAFIEDVKEEK
Ga0211641_1000227718F010471GAGGMIQLTLATNNKAHPEYSDSQIAETLGVLPMWVAEYVGNDNDADIVKFMTDRYGCGRLYEFKGTINEEGDYVSEHEEDADLPYMGRMITKHGYAYFYDYAIVALPLPNGKHFITRMD
Ga0211641_1000227721F090997AGGAGGMKIRVLAEETVYKECFVDVPEHILEYSKDKLSKTYLKNAIHNWLSKNGSDFKWADYDFSFDPYTWEEVQDND
Ga0211641_1000227725F067202AGGAGMNTPYQKRQFKDIVIAAEDLDCHTIDTIADVIHEHIIDIGLATSKTLVGFSWRLDVRVSTSNES
Ga0211641_1000227726F028349AGGMKVKTYHKNGKAVQFLGYSDIDAFNAAKVVMGEVGDVGYFRPRLGAGEDIYDWVYVKETTDEDLQRVLGK
Ga0211641_1000227727F020815GAGGMRLYMNKQGEWVGTQAEAKKIKADMVEVPTDKPNLLKWLNTFTGAIDDAAKEVIDNKPNPGTVARKPHKYDFWDNIRDVAENCSITDFNIALAVFMDRVHDIAEKQKETQQ
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