NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211641_10011646

Scaffold Ga0211641_10011646


Overview

Basic Information
Taxon OID3300020450 Open in IMG/M
Scaffold IDGa0211641_10011646 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5066
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9554Long. (o)-100.6925Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y
F032291Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0211641_1001164613F032291AGGAVTAVGVPEIAPVEVSNERPAGRDGETDQLVTGPPLTLGVTVVMAVPLVNVKAFGLKVKEDGATSFTTIVTSTVLVPPVLLAVTV
Ga0211641_1001164614F008747GAGGVGVPLIAPVELDKERPAGKDGETDQEMTVPPLEVGVTVVIAVPLVSVSELGL
Ga0211641_1001164616F032291N/AMAPVDESSANPAGNEGETDHVVTVPPLDVGVTVVMAVPLVSVSELGLYDRDEGAMSFTVMLTVAVVLPPVLLPVMV
Ga0211641_1001164617F032291N/AVEESSERPLGKEGDTDQVVMAPPLDVGVTVVMAVPLVNVNAFGLYEIEEGAMSLTTMVRSAVVLPPVLLAVTV
Ga0211641_1001164619F032291GAGGMAVGVPLMAPVEESMERPAGSEGETDQEVTVPPLEVGVTVVIAVPLVSVNEFGLNVRDEGAMSFTTMVTSSVVLPPVLVAVMV
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