NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211641_10062528

Scaffold Ga0211641_10062528


Overview

Basic Information
Taxon OID3300020450 Open in IMG/M
Scaffold IDGa0211641_10062528 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1942
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9554Long. (o)-100.6925Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042384Metagenome158Y
F049043Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0211641_100625282F049043GAGGMKNDITEMHMRFIQLVMEMKKEGHDPLAIAGCMLAGAVQMYQKELGDETTNELLDTIANGGDGDIDIEFDEETYH
Ga0211641_100625283F042384AGGAGMGLMPVYYTTTKLSGRKKSSVKNQRLNADHEKWLRGMGIDKPWKPKSEKLASERAIRSERYQSVGDGIGNGFVKTTSTLSGEYVIGQAYNKGNLVVLSKEDAKDESTGKRR

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