NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211473_10042887

Scaffold Ga0211473_10042887


Overview

Basic Information
Taxon OID3300020451 Open in IMG/M
Scaffold IDGa0211473_10042887 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2261
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.7956Long. (o)-37.0998Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083754Metagenome / Metatranscriptome112Y
F096285Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0211473_100428873F096285GGAMNWLKTAAIGIWIRAHSDLLFRALVSLGIFWILNSVYSKYEAVLLATNPEKLFIPLYIYTFIILILVIWTLLSLRWVSGISVAKKKVAAKESFTNKSDEYKKIADVKNYPKLKTKKDSIIES
Ga0211473_100428874F083754GGAMSLTKYIFNSMKKYRFISPMKEKEFEAKAAIHRKKWKAKMFLQSSSFFDEQNPKCGWEDNDPVISMPQSKEDVKKYFQAYERHELDYITYSSLQIESKIHQEIYKLPENVQIYIAGLNMAIESGVLNPWEGVLSRFFYTQHEWDLFLILDMLKKTSDIYGMDDGPWPLYWFKSRELLFEALHRYPDLIKNTVGRSLPLRIWDQKDFVKEIVAVNFELFKSAPRHIKESRDKVLEAAKVDGRIIGFIKTNMRNDPEVAMTAVNSHADAKDYLFKKTRDELGLI
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