NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211545_10003740

Scaffold Ga0211545_10003740


Overview

Basic Information
Taxon OID3300020452 Open in IMG/M
Scaffold IDGa0211545_10003740 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8703
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.6906Long. (o)-16.8555Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022458Metagenome / Metatranscriptome214Y
F030151Metagenome / Metatranscriptome186Y
F092876Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211545_1000374014F092876N/AMDKKIKTPLTELIKQFESELEHENTRQGLKYAIALAKRMLKREKEIMCWFADEWHEMKLKKNF
Ga0211545_100037407F022458N/AMIDDWLNQNPDDGFDPNDHGIEMDEIAKLHAMEDMKEDQEIWAREQANKFYNDFDSLNISDAILAVGSLIRNKALNIKQVNTMLDNMIEVFKMDEEYEKCHVCNEIKKGLNAKF
Ga0211545_100037408F030151AGGMLSFNAKNIEDLEEEARERALEVSVEVTTAVVKALDAGVDRVVIGILSSLDMDLSVDRANYLEALETNLVRCEEAEEYELCKESIKWIKKLRE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.