NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211545_10082301

Scaffold Ga0211545_10082301


Overview

Basic Information
Taxon OID3300020452 Open in IMG/M
Scaffold IDGa0211545_10082301 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1525
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.6906Long. (o)-16.8555Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046315Metagenome151Y
F059875Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211545_100823012F046315N/AMEYSGKSGYNNSFIEKFMKRNDFLPKEFAFRKHALDLILKKYNKKIIDFVRDTYSPKEQKNKLAQISKILNPKKNAPHYYTVNHFSYDLCTWVNNFSTTDVIISPEFFMGENSQINVIGSLYGSGQIILNKGKDLYKINVHPKYSTYSAIECHVDSKRGLMMLYQPNKNVDRLANNKTVICQDKKTKVIWYGYLDPISNGKFNILDKSTSTGKTIGKLAENISLSWSAEIKAAYYPNIYN
Ga0211545_100823013F059875N/AMKILVLIFGVITNDGKIELIKVPNSEFKNLNSCEKAIETIAKWQLNPKSKPGNYEVWGFYTYKNRPIMLQYCTDSGVEHE
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