Scaffold Ga0211545_10463029

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211545_10463029

Scaffold Ga0211545_10463029

Overview

Basic Information
Taxon OID	3300020452 Open in IMG/M
Scaffold ID	Ga0211545_10463029 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	574
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_152
Coordinates	Lat. (^o)	43.6906	Long. (^o)	-16.8555	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010695	Metagenome / Metatranscriptome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211545_104630291	F010695	AGAAGG	MSNLNTQNQSKDKIHTISGYSIGSFTCYNANEEDSKSVNIQLTSLEEMWYGHEENIDHPAHSEYPVSVNVPHLKVMRERVFDSVLNRTGIDVRKFDSILHATTSPGRDEKGNILDYANNNIIRNV

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