NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211550_10000512

Scaffold Ga0211550_10000512


Overview

Basic Information
Taxon OID3300020453 Open in IMG/M
Scaffold IDGa0211550_10000512 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001758 (ERX556003-ERR598963)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20515
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_149
CoordinatesLat. (o)34.0491Long. (o)-49.8315Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038463Metagenome / Metatranscriptome166Y
F102066Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211550_1000051210F102066N/AMDFILTIILAIATYGFGFVSGVINGTETKEIQEDNKPINQDRKEAFEFAFKNYINK
Ga0211550_100005129F038463N/AMSYLILPKRAFNSPLIEYANFQDESFVNLIKLNKPYANGISYAVYETTNNPFCSNGLFTTYEKAKIKFELMIKNHTYKSKLIKKEKINNN

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