NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211550_10283537

Scaffold Ga0211550_10283537


Overview

Basic Information
Taxon OID3300020453 Open in IMG/M
Scaffold IDGa0211550_10283537 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001758 (ERX556003-ERR598963)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)776
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S04-C491(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_149
CoordinatesLat. (o)34.0491Long. (o)-49.8315Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045677Metagenome152N
F048238Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0211550_102835371F048238N/AMATKSVHLQYCQIEDENFPLAITRFTSFDLDDKPLSVEQVTYESNIDYMERQIINALRCNVEVSILTTTPIHEFKRLHHIFKSDK
Ga0211550_102835372F045677N/AMKEIKTLLPEELVERLSTEAKEKGIHRSELIRERLSQPPNHFGLTTSDFHKAVTKVRRRSSYGLDRQQAESLVATVFNELFSPGHGD

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