NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211548_10324783

Scaffold Ga0211548_10324783


Overview

Basic Information
Taxon OID3300020454 Open in IMG/M
Scaffold IDGa0211548_10324783 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)751
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.8591Long. (o)-37.1728Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037237Metagenome / Metatranscriptome168Y
F102838Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211548_103247831F037237AGGAGMSNIGNLVDRTFREYLEPMDDLVSYTTLSTGVNNSVADIVFDGDMLSIEEEDALDKGTIVEINQELMICTDLNAVTNTITVKRGMKGTSAAAHTAGDLIKISPPFPRKNVFDAVCDQIKNLFPTLFAVETQSITTGTGYTLLGSYDVPGTHNYIMSILGAISQYTDFSAGSDTTGVNFSPVTSSL
Ga0211548_103247832F102838N/ANSTWVDVKETDGTDVTYTVSAGDIVRVDPSGWAFASNGYIRITSDGNEAADRKIILHFRH
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