Scaffold Ga0211664

Basic Information
Taxon OID	3300020455 Open in IMG/M
Scaffold ID	Ga0211664_10000041 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020455 Open in IMG/M

Scaffold ID

Ga0211664_10000041 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	122669
Total Scaffold Genes	146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	72 (49.32%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

122669

Total Scaffold Genes

146 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

72 (49.32%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9226	Long. (^o)	-96.0932	Alt. (m)	Depth (m)	50
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_100

Coordinates

Lat. (^o)

-12.9226

Long. (^o)

-96.0932

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012583	Metagenome / Metatranscriptome	279	Y
F025020	Metagenome / Metatranscriptome	203	Y
F031251	Metagenome / Metatranscriptome	183	Y
F031447	Metagenome / Metatranscriptome	182	Y
F043346	Metagenome	156	Y
F045145	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211664_1000004113	F031251	GGA	MFHLAVIASTFTCVDAQLLIDKMYEFNVEEETRAEMILVVIEETPECWDANAD
Ga0211664_1000004115	F045145	N/A	MDRDKLKIIVSDLEMLLSALKAEVYSDTESYRYSDIEAHEMDYDEEFEGT
Ga0211664_1000004163	F043346	N/A	MAIPHPPRAENYGNQDLDPRWEIGDFKVGDIVECFLCLNGTMQPSKPDCGVISFVSGGYMSLCVGCNAEGRAINVCINQLYHIRILQEHEYTKLDTSLQKGCQTKKATTGIETGEEETLAVSHTLEKRIETYPLEAKSY
Ga0211664_1000004177	F031447	AGGAGG	MLRQYVITGTKTFTYYKTVHAEDITEAHLLAHEPSEDSDDDWTCYFDYDYDEPTEDNGLMVVKHIEDEGEI
Ga0211664_1000004184	F012583	GAGG	MSLSQQIKIQEFDKYILQGGDQSLSNIEDLCVYGFVMMDTEPDEETFNDVVIDVIRKLKLALHLQ
Ga0211664_1000004194	F025020	N/A	MYILYNVKYDTWAVSRTFYRWQSLEGHVKIRLFDSKSFIMFPSTILETIKANTPAPARSFNINTNSRDLDFQVSTKQILQILRKNPQGMTLTEIAQAVDPNWQTMNCKRMFKQAIDPLCLRDDVRFTTSKSGKRVKYFPTRVSKRWLVKELFNTFAQAKNS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211664_10000041

Overview

Ecosystem & Geography

Associated Families

Sequences