NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211664_10000210

Scaffold Ga0211664_10000210


Overview

Basic Information
Taxon OID3300020455 Open in IMG/M
Scaffold IDGa0211664_10000210 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54707
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9226Long. (o)-96.0932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040330Metagenome162Y
F040673Metagenome / Metatranscriptome161Y
F051160Metagenome / Metatranscriptome144Y
F097161Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211664_100002102F051160AGGAGMAKVIKAIEVAADAVKMVSIKHTKVMKDASDKDVTVLDWEETKNVDDAITDAEAQKAKLEGMLKDVEADLVEYKKVKDA
Ga0211664_1000021025F097161GAGMEKEKQIDDTISVDVYYSFDEETGYYLDREGITDEFMSRLGEIEENIDNLNHERNDHLRTKYMEG
Ga0211664_1000021026F040330AGGAGMSDAEKAFDLQEKIAKLIDKLDELGFEYMYYNNISSIRRKRDYGKRKTDR
Ga0211664_1000021028F040673AGGAGGMSERKSKIDMDDMWVCDYCGTEEVSQSAWVNINTETMIDFIDGTYWCESCEEETEPITYFEFKEKIIEECGGNKDKYDKIMDGSRM
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