NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211664_10000329

Scaffold Ga0211664_10000329


Overview

Basic Information
Taxon OID3300020455 Open in IMG/M
Scaffold IDGa0211664_10000329 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40935
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (64.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9226Long. (o)-96.0932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022078Metagenome / Metatranscriptome216Y
F023368Metagenome / Metatranscriptome210Y
F058216Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0211664_1000032936F058216AGGAGGMPIRKTVGQLLVENHWSVQRLAVAINITKEDIKKWARLNKRYKKYKR
Ga0211664_1000032938F023368AGGAGMHKYNKSTTKYKDVSNDDNIFKKLDKLYDETNDVQTIRDCESLFPTLAHLSMPSMCCGWVSEEHFNNLLEKYKIDLTPYVKDDERITTSIKSEIADEMFKLVETGKYKKRNLIKVLREKFKDVNAGVIHRLIKKNMDLRILEIDRTYKTKPYVIKGKYYIGG
Ga0211664_1000032963F022078GGAMPKYTFRNIHTDEHYDMMMSYEELQEYIKQEHIEQVFKINLYRYSDNNGIKDQETAWLRDPEVKGDGAFKPYGKVKTKQDNHNYKVMKNKKHFSEKI
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