NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211664_10003846

Scaffold Ga0211664_10003846


Overview

Basic Information
Taxon OID3300020455 Open in IMG/M
Scaffold IDGa0211664_10003846 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8904
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9226Long. (o)-96.0932Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025055Metagenome203Y
F032303Metagenome180N
F043609Metagenome / Metatranscriptome156N
F046625Metagenome151Y
F069319Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0211664_1000384610F069319GGCGGMLDSYTFKPSELPKIYRVQIRDIIKDVVDSKTDMYWKNYTKFNIDEQTAISVSCIDHKVKVISTIYHREFFGEGVYRLWNRFLYSKDFRETGGSKKRDGVHINHPVLEQQIDFVEKLNPKFYFISRQRTNTRWLKYYFDTFNKEYNRNLVVNDNQYWVCNGDKEGCVQTIIYPKDMKVSLKQYK
Ga0211664_100038462F025055GGAGMIDIIGDTVKKTFDYKGEDNFAFLKNEVFWLNYLKSKWVPELIEVGNNYVITRYYGPDLIKNKTRPKDLADQTLEMYKFFKEKNVFKLNGALSNMTMNGNQLVAFDWKWAKFRTDKYIDYEIISYEKWLSKIDSELVEKLKCMI
Ga0211664_100038464F032303AGGMIKHIAEIEALDFASKQEHKDKWHKDFYYWKRHLLALKNWPWLKKFYKGGKWLGHFDEELNGVYWYNLQGDEMYDGFLISSKVGVGIKLGRWLEKNIKYKTNWSCCSKQYVKFNERLGFEIKSMDNIEEQEVFLLCRKKY
Ga0211664_100038467F043609GGAMRTDNQEFHNILKSVDFADISDFWSVPYKEILEEVKDIPENKWRKPFDADYKREGLNDLESNIYYPGSKGDLIPARGWRSVTALNETGDYRDQISKFTPVFNTENEYRNKVKEVKENSQWTNISHYLPTLKEFFEDKIFPYMYVGHIYVSALDAGGIVTEHNDIPDDSRPMLESDRVHSFNVLNTFNMVLNHVKSCYSCFNGKILPAYDGAIRWTNTGNQHWVVNMNKESQYQIIWQGLYKKSFRKLVKEKYKYSYDNNQ
Ga0211664_100038469F046625GGAMMLKNLIVKNFLSESELNSFTYDNKEEFKSSSGSLILYYQKLLTSISNKIAKHIGEFSLRDAHIHYLKQPYRLHCDSGKTNNSHYTIIVPLDKEPQGGLYIMNQWADKAYSLDDYYTQDWQSVLSLEERKEKIKEFNSDVSLPDTIDFEHIKDKKGFTVKNYIKYEYNTAVMYPSKFFHCSQNIENFTNKKSLAVFTDVR
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