Basic Information | |
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Taxon OID | 3300020455 Open in IMG/M |
Scaffold ID | Ga0211664_10012560 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4399 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (36.36%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_100 | |||||||
Coordinates | Lat. (o) | -12.9226 | Long. (o) | -96.0932 | Alt. (m) | Depth (m) | 50 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F024886 | Metagenome / Metatranscriptome | 204 | Y |
F031892 | Metagenome / Metatranscriptome | 181 | Y |
F084085 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211664_100125602 | F031892 | N/A | MTSLEFNVLVDELDSYAQQTMNKKGPEYTTGNEDVLNNFKATAKKLGVDPLVIWYAYFDKQVSSVAAHVSNEDLNKAEPMISRFGDIINYAKLGYALFSERDNL |
Ga0211664_100125603 | F084085 | GAG | MMCKDVMMTLLSLIEKEMKRRIEHSYFEEESDKWSKFHSWIREIRLTINKGGIK |
Ga0211664_100125607 | F024886 | N/A | MSRKFKNEVTFKVSVDVNGKQEYNFMERNYDKLCDKLTDIMIRETL |
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