NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10000244

Scaffold Ga0211676_10000244


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10000244 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57616
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (81.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004327Metagenome / Metatranscriptome443Y
F012734Metagenome / Metatranscriptome278Y
F036692Metagenome169Y
F066687Metagenome / Metatranscriptome126N
F072353Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211676_100002441F036692GAGGMQNTVYVLQLQGTGDDEYAFENAGVFTTELLALEKLANINAEYEDADMLVFTLQDENARIETHTINA
Ga0211676_1000024427F066687GGAMIKIVDDVFPKWLLTTIQQSISNCKQWEYGRIKSAYEDEYENYYNCMLWHKNYPEMEDPLKGLSNVMASCFALELLPGGPKQLEVLRLNGTTPASKQYPHRDCDMIADDTERLQSIVWWPFGSDGDLRFWEQQVDIVNPSRTVEYKPNRAVIFDSSIPHAGNPPSDWPMRVSINSVWKLS
Ga0211676_100002443F012734GAGGMTRQIKQIEYGYWWNCGACGTENAYGLDEAEAEEYIKDFEINNAEEVAEGETGEGACDWNYNVIAEENDAHIEDKEKCWKCDAVATADTRTDKAKFLDALIDNIVQK
Ga0211676_1000024444F072353GAGMFSIFNKPSKITLDCFTDQRVIYDAYEPELAKDTMPEWWKKMVSTRKFDSMTYQGLDNATLKRCPHVNELLTTGVMFPAWMQLKIKTFDQPDQAMIQTYPEGSPVIPHDPQDYAHHKPNMFHGKVMSPWQIRDTSGTKWLWTSPQWHMTNPIEYWTVPAISEFKYQHATIVNLMVPFNSELNIEPGDPWLHLVPLTEKRIELKTHLVSSEELNKMNSLMMGVGSYSRFINRMKKKGK
Ga0211676_100002448F004327GAGGMNRTYIKIGTKVDTKWGEAKVTGIELCKAGEKYGIGMDKIFVEDKDRCTFDMDNGHWSYGYQIEVAS
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