NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10001786

Scaffold Ga0211676_10001786


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10001786 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22248
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (52.63%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038900Metagenome165Y
F080616Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_1000178610F080616AGGMRDALILGCSHAAGALMHEDPEYGAQNSYPVLLANMLGYTAHNHAISGGSNDAMFRIFTEQTHNYDLVIACWTGMDRGEYFHPAHKQWIPINYGEGDSYVRKPSKHLLQGIPVGVEIDDKQMYEAYGKQWLAIEGDQQRGHNNKLKNILALNVYAQSQGIKVINIDSFDGIHEKRIRPFAYPSTVYRPLNGPINEFIGYCTRQGYPTEPRGHFFRPAHLAYAELIKHKLDNTRSPLND
Ga0211676_1000178625F038900AGGAGMHLQTKDVSLYTKVTSRLKNGRHYRGFEQERAGLQLQQFTAQKSAIEHSLANQKEILWRALALGVPTVLLTPRTIQFMGNNDVVADEIMTNAQLKAFDTSENHYSRSTWRSEVSDEGNECLELNLNYENYAVLPSEQGFFHYVDGKYERIKNRHKQIEMLWDYGFPSKRGRPIMVGRVGHSGSKIEIIGLVDWLEKLRMLNNGSEIQYKTQQIYNTLNRSYAWPEHW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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