NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10001881

Scaffold Ga0211676_10001881


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10001881 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21688
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042623Metagenome / Metatranscriptome158N
F051535Metagenome / Metatranscriptome144N
F079321Metagenome / Metatranscriptome116N
F098202Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_1000188111F098202GAGGVQNEQVKLTTTDNVMVFITAIFLYIHVKQLLVSGSSFMLSALLGVWISMTIFDMYGRWRLKTRD
Ga0211676_1000188117F051535N/AMHLKKHSMKIDFYLKWTATSILIVGCFINSAFPDWYPVGPILLSVGGVVWLIVSCMWREWSLIVTNSVMTAVGLIGMAYYYLS
Ga0211676_1000188128F079321GGAGMLKKLAVIGLTTALIGCGTSNRALADASIFTQQNPIDYTKIFNERTAIMGILHFMKEKPYVAPVNNQPVFFNHTKQDAKLDAVLSQFPHNAFDVYIKSPTYPNKNRRTYMKLDFTVGWNDGYLNKLYTTVASMNTRQGAGFAKFINKKHWTTPGYDVQLDMTASNKLMRGLYRAGPQLLVRVGNRSLGCYNVPELSGLTQGRMAKHKMVQPNGNGTIINGWLEFTTSIQFEITPDDDIGNVRIFVVNQSQCR
Ga0211676_100018817F042623N/AMELVEEYTRVIKVEEGYPHAKTLYLPTGEIDAVVDWCKQELSPGWKWQILTSSSPTTPGAYAFFFNADSDFFAFLLKFG
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