NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211676_10018980

Scaffold Ga0211676_10018980


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10018980 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5522
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049283Metagenome / Metatranscriptome147N
F055006Metagenome / Metatranscriptome139N
F067197Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_1001898010F067197AGGMVQIWGSILMVLSLLVMAGVPTEDFAIMCLLLVCGMVGFVQGFIMLKMGK
Ga0211676_100189803F049283GGAMYSFKVSKMKNVQTVVHNADDIWAAAVYAQRINKGYFKEDEFNADGECTREANRTVARNAIALGGKITVEDRSKGAEVRKFISSRLMLSAITKKLNNFQQSLSKAVAMEEFVVPQDRMAIGIVNSQIAMYERAMKEEALTKDSVYGTFGKLKERVDVNLKPVARFWLTDWGTFRYNSITTDGYKTSFYYRDKLEIGDAVKVRGTVTKHTNDTTTINRVKVLK
Ga0211676_100189809F055006GGAMWKAVLVVCSIGSPDKCETWVDAIGPSKTYEACIDRALEMNEDAFKHLQFYKGERAWKGRSYQCNKLPGGML
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.