NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10069413

Scaffold Ga0211676_10069413


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10069413 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2417
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012734Metagenome / Metatranscriptome278Y
F028616Metagenome / Metatranscriptome191Y
F028831Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_100694133F028616GAGGMGIMSKQQYLNLMSCVKRKSYRVYHKYARPSRINFETYAPALAYCKKHNLNYKSSWVLTTVHHCA
Ga0211676_100694134F012734GAGGMMKQIEHGYWWYCKSCGTENAYGLNEQEAEEYIKDWEEDNADEVAEGETGYGACDWWYNVMAEENDAHIEEKHKCWKCDAVAHADTRTEKAKFLDALIDNIVQKGT
Ga0211676_100694136F028831GAGGMKKYTTQQIQAGIKFLQNKNVSFDFDKDEMQVYINIDVHNNRIWTDGSSIWNNNVVKGVKVENISLIATHSIGHYAVEDRAHLSDDDLYWGGGLTGNINYDGSGKDGTWYDGADDENNALINKIKAQESDGMIYSDDGFIANSINYMEEHCDFNAKLLNGFLDFCYSEQGMQDDGAVNLDVDMDGDFWIKCNDELVKFITKAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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