NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211676_10077698

Scaffold Ga0211676_10077698


Overview

Basic Information
Taxon OID3300020463 Open in IMG/M
Scaffold IDGa0211676_10077698 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2249
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_094
CoordinatesLat. (o)-32.7806Long. (o)-87.0917Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042384Metagenome158Y
F049043Metagenome147Y
F056677Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0211676_100776983F042384AGGAGMGLMPIYYTTTKMSGKRKSSVRNQRLNTEHEKWLRGMGVDKPFKPKSEKLAVERATRDERYQSVGDGIGNGFVKTTSAISGDYIVGQAYNKGNLVVLSKEDAKDESTGKRR
Ga0211676_100776984F049043GAGGMKNDVKDMNTQFIQLVLQLKKDGNEPLAIAGCMLAGAVQIYQSELGMETTYDLLDQIANGGDDDIDIDISVDKETIH
Ga0211676_100776985F056677AGGAGMDVYRNQEREMILAKKPLIVLEDELWQINQLNRLRKDLRNRKKRLEKVIAVKRLALQAVQEKIAREVDKQNEE
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