NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211640_10000581

Scaffold Ga0211640_10000581


Overview

Basic Information
Taxon OID3300020465 Open in IMG/M
Scaffold IDGa0211640_10000581 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24605
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (48.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9687Long. (o)-100.7324Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002190Metagenome / Metatranscriptome585Y
F032815Metagenome179Y
F035123Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0211640_1000058130F035123N/AMKHLKAKDSYMFDHAKKYEVKTMAMDEIVPASIYEEIPERDELEESMANGEMDFPLILWPMTQEYWQDIHLDYYKRGSPTLPEEAPEKDGQVLVVWKGRQRYQLAKELGYTHIDCVIEPELHKIVAIAKPKE
Ga0211640_1000058135F032815AGGMQRNFILTDIMKTGNHVQFEKFINLNTLHDQTFDMTGEYYTLHNYDLDTYDRRFAMIDSRTSNHRIKDSNEFHNELRKRCELLHSQGFVFIKANPWESLENVNKTKQYPEIDIKHIKWTGGVSWFWFYMYDKHKDKKFNFNHSKKKYDFLYLNKMP
Ga0211640_100005817F002190N/AMSSKLCYYICLVTKNDKTEEYGYGLPWKDVQRHVQEHYDDGAAAVELEMITEEQFNDRLPKP
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