NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211640_10001685

Scaffold Ga0211640_10001685


Overview

Basic Information
Taxon OID3300020465 Open in IMG/M
Scaffold IDGa0211640_10001685 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14074
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9687Long. (o)-100.7324Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F000464Metagenome / Metatranscriptome1105Y
F000681Metagenome / Metatranscriptome939Y
F055858Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211640_1000168513F000379GGAGGMNKIDYSNKHGIMVGYIDNQQNVVAVETGWKTTPEAMTQVLMGQYNSKEMAQSLVDSPTLMPTFKKDDYWYVDGFGDVIESNLSWNKECMRKNVGHLFLFMKGTWQYSDNGIDWEPAVECFKEVA
Ga0211640_100016852F000464N/AMKLSRKNQQKFIMYRTYRHHDPDIDDFDEDFWPIMGVLLTILGIWTGAIHLIDFLTWNAIPLWAEPFTIIPIIFLVVMKEKYDSLNPLHWWPLFWGYNAKLPDEDRITIRPLDTERIMKQHGGPLNVHIIDYEHIKFRRKKDAVIFGLKYF
Ga0211640_1000168524F000681AGGAGMYKRCEHYYSVISTEDLYKELNTNYTGETDLVQSLMSRAISNGWVETRHELGVANEELWSLNDWPEGEGFGSSDHYEYDRRIQKSIAFERKFLQAETELVQINKLTESPKNDTVRAYMKMNDKIAEGMVA
Ga0211640_100016858F055858N/AMPNSDNNFGTYNKQTKIISQVDDGSTTWTIFADVAAAKTFYFTDDALTVMDECCTILEWALVADDNGDNTKLKTTFAFGTKGSAGIAEADDWAGQYNSRKTALINSHQWVKIGKAAVFTASSDHLV
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