NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211640_10003135

Scaffold Ga0211640_10003135


Overview

Basic Information
Taxon OID3300020465 Open in IMG/M
Scaffold IDGa0211640_10003135 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10432
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9687Long. (o)-100.7324Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013594Metagenome / Metatranscriptome270N
F073584Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211640_1000313512F073584AGGAGMGKIVTDELEERVGSAGVTVNSTMKIDTIAEKTSANGVTIDGLLIKDGAIPSSGVTGAVDIGLVIALG
Ga0211640_1000313517F013594GGAGMSTTYGDRPLRVTFTSSDSSGVAEFFDGSETGAIGITVPRFSTTERNALTASTVKQGMIIFNETDGKMQVYTGSDASNTSSSWTDIGGGTILADADGNTNIEIGATTADEIDVDIAGTKIATFDAAGLAIETGGVGVRHNSTIASTSTIAAGENIGLFGTVTFTGVVTVAGEMVVV
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