NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211640_10046158

Scaffold Ga0211640_10046158


Overview

Basic Information
Taxon OID3300020465 Open in IMG/M
Scaffold IDGa0211640_10046158 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2571
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9687Long. (o)-100.7324Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002334Metagenome569N
F045808Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0211640_100461582F002334GGAMTLGVFHQVHHNLKATEEAVKSFRQFHPDSPYVLIRDGDNGEDFDSIAKEYDCMYLKQKDNLGYRDHNHPSGIYGMTKEEVLEWLHRFRQACTFCNTDHIIMMEDDILIRGEIHVPEEWEFAGQAKPGNLLQEPFTDYLTEKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIFDEEFDYIKTNLCGNLGWVDVWMPMYFFLCGKEYRHNNLLTETTSNPIWTISKEPIVHQYKVHYV
Ga0211640_100461584F045808N/ANGSYQAGAGREYCDWFYCGPQNRVKQFDPLEVFDDFYEDGIRHMHELVVETLRGLQIPHVVLDLKAWMMDRSKIK
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