NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211475_10636982

Scaffold Ga0211475_10636982


Overview

Basic Information
Taxon OID3300020468 Open in IMG/M
Scaffold IDGa0211475_10636982 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_018
CoordinatesLat. (o)35.7392Long. (o)14.3321Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F092187Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211475_106369822F000302GGAGGMVEIMSTETKLRIRDLEQQKIELENRLELLGYSNNLVKMHQIEEEIYEIEDTIRKLMP
Ga0211475_106369823F092187N/ADDWYCMDCEHGPMGEKDDECTRCGAKNSQYVNEEITGWEDEDIESEVEEIW

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