NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10001681

Scaffold Ga0211577_10001681


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10001681 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21045
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (89.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014509Metagenome262Y
F024652Metagenome205Y
F042972Metagenome / Metatranscriptome157N
F043440Metagenome / Metatranscriptome156Y
F067842Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0211577_1000168112F014509GGAGGMGIHIGKHDRSSSWIGRFDPQNPDDMLEYEMVKSVVRACNSTKQKFRVEKKGRKPTNGFTYFGDPIGGIKNATLWDVYVYRRYTL
Ga0211577_1000168131F042972AGGAGMVKFDNIFYVGDTVETKYGFNKIKKIEIMPEPRHSSKCGINVDKMHEKLIDHCIIDLDNRHFIYGDEIVKV
Ga0211577_1000168132F067842GGAGMEYQTCVYTQDNATKSVTLSVVERGYSEKNSVDNAFDTFKCLALNLNEILKIETKEI
Ga0211577_1000168135F024652AGGAGGVHSNMSTEIFNMDMSFSIDDIQEKSEWLERSELEAKQIHSKASTARGRTYDQILEVCLYGHAAEQYLIETGWEDDLRKYKDLIDPLGDNVEIKVTEHAGNISYVLDRCKEAKLETWRNYPDIVYVFTNDKKSKEYVHEGIYVWNGKKFNRDEIN
Ga0211577_100016816F043440AGGAGMKFFIIVSFIMANTAALDRPLYVFAKPNFETVRECREFVSVMHQRIYSAASASYNYKYTPESIYCITKDEVKDIFQYSYDQKEKKNI
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