NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211577_10004999

Scaffold Ga0211577_10004999


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10004999 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11575
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (24.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029108Metagenome / Metatranscriptome189Y
F040577Metagenome / Metatranscriptome161Y
F066686Metagenome / Metatranscriptome126Y
F072343Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0211577_1000499917F066686N/AMKELQDIINDLQARLAIVGGGRIIITSDHVSISLGEEHENFEIQEGLTKDQTDVEMYNQMWGQ
Ga0211577_100049993F040577N/AMDELQKISAEIIEIFNNKIEKLSEEQAEVLNLHNNSMNFYVELGDPQKAMWEAKETLKYLTQITNDG
Ga0211577_100049995F072343N/AMHTRREIDHILDQISEIIAKNKTSNKQNDDDKAMIEHLKQTINLKTDNGKRAKGMWTDSPEFMYKQ
Ga0211577_100049997F029108N/AMNQINPNKYLVGKKKSGRGMVGHKGGLATPTGAFGGKSKFNKKRLDKSE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.