Basic Information | |
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Taxon OID | 3300020469 Open in IMG/M |
Scaffold ID | Ga0211577_10052311 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2973 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_133 | |||||||
Coordinates | Lat. (o) | 35.4068 | Long. (o) | -127.7432 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F042580 | Metagenome | 158 | Y |
F047319 | Metagenome / Metatranscriptome | 150 | N |
F052892 | Metagenome / Metatranscriptome | 142 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211577_100523111 | F047319 | N/A | ANEVKHSVGVIMRPFIHKKQTFYDVLLERRTGLSFLNTAKSSKQSFINRELTTKLIDSNSIETTIPFKAMLEFEELPIMIA |
Ga0211577_100523112 | F042580 | N/A | MARPKLPEIDKLKKRVRKRYPGSYCVQDSLGEYYIMWNEDNLNETFLLDNTSTELKAWEQASITAKHEQHINRTHPLKQLMSQEQKNLNKERITKRIRKL |
Ga0211577_100523117 | F052892 | N/A | MRPTNSLCFLPTIEFQHKRFNVRRLVKEDPNENIEFWKNIIEHDTVLRKDGYLWFLVEITAVEIFEE |
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