NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10157780

Scaffold Ga0211577_10157780


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10157780 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1523
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004368Metagenome / Metatranscriptome441Y
F005266Metagenome / Metatranscriptome406Y
F085576Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0211577_101577802F005266GGAGGMSVHIRYRFYKEKDHYLEDERMTRGYTLVEGDEPTPFHVVLKEFYKDMKNRAKVINIWRTKSGEANYRMEEEERLLWE
Ga0211577_101577803F004368GAGGMGVRLTDIVFDRHEDFLYEDDRAMKLTPYVMAERCVQVEVAKIFNDKESGDYDTLTYIIEGGFKGFHNMDSSELIEEYKQIEEQWYELESSDGLYWDAYEEDPIHTLNDEVVAS
Ga0211577_101577804F085576AGGTGGMKQWYIKLKAGNFENGYYEVGHNFDLVLELVKTEFNKDCIALGFTPVTSEIVYMEQNEI
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Institute for Fundamental Biomedical Research
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