NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10382147

Scaffold Ga0211577_10382147


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10382147 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Veravirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035551Metagenome / Metatranscriptome172Y
F079326Metagenome116N
F094531Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211577_103821472F035551AGGAMQLRELTQALSNGDDVRWSNDGYHVQWETLPNGAAICIRYTANGFGGAMADSEIKDCYIKESA
Ga0211577_103821473F079326AGGAMTRYYIATVSSDGRHANQRWLTNVDDLTDVMVQYVNEGYRVTIEEEIHQ
Ga0211577_103821474F094531AGGAGMITEDAVQAYNKQFKQLVGSKILNFKMVQCEFDPHQYWPTFSMQLADQKYKLVLSQDEEGNGGGFAFIE
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