NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211543_10579841

Scaffold Ga0211543_10579841


Overview

Basic Information
Taxon OID3300020470 Open in IMG/M
Scaffold IDGa0211543_10579841 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5375Long. (o)70.0244Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001504Metagenome / Metatranscriptome681Y
F049702Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0211543_105798411F049702GGAMTLIDFDKKELHDIYSSLQYTRLEIGFESKSEEELYDRLTKLMDKVAKVRQMCTCKENVS
Ga0211543_105798413F001504N/AVVRLMTQDTEHFYAVQSFLEDDELDKIWNIIEIAMEREGYDVQNAELSMRLYDPELTETIGFYNK

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