NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10000122

Scaffold Ga0211579_10000122


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10000122 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62754
Total Scaffold Genes109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (65.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002191Metagenome / Metatranscriptome585Y
F018809Metagenome / Metatranscriptome233Y
F082915Metagenome113Y
F099847Metagenome / Metatranscriptome103N
F101347Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211579_10000122102F082915N/AMVTVSPYYKQKNVLNPYYTLQKAVDQKVSKLLKDRKVKGITELLYKNVDNGRGTLLLTTNGKFIFQVFNKQTDLKYFITIRKSDITGHYGMKGRKDTTASSNVNEILSVFFLINKYSPNTYSNKLESDVSKFGRKGTGVLNPSSGGVDEVSYEQLAELIDKDETAERDIKIGFNNAIAINKDIGGKKPYKVYWCPRGKPPGVSDKNPSDVVVELKKGDYQGYSNKISEGKDETPKFNTNMYAYFGKLEDTKQLKNVCTMIDTAWDQAEKEIPKDKKLILGALKNFDIRKEKYSESASAKSFGELATIFRSQKLDFYAEGFYYPFRNNVIKNLGNFLKKPDNLMYFLNTIFFYTYEDPRVKSTPCPYKLLIGKEQGPSIMKDVSADSDLKNILSVKKSSELKNINFDYDNKGQSFKLFFKYKSFSVKMPVTCRTRAAGGWKGKSLFITTSGLKIV
Ga0211579_100001222F099847N/AMLDGIIYTILNWVDTTSKRIREYMINKSLPSPCKSASEWRKDYDKWKKNQYK
Ga0211579_1000012226F101347AGGAMIEIFLEMPMELKVIILSCITMGVIQVIKDEKEKTRQKYESEKSFEKRTSE
Ga0211579_1000012235F018809AGGAMGGKMIKNLIIIGLFAIVFTQTDIGITDVFNYVELALDKLQEMVYTMKRSV
Ga0211579_1000012295F002191N/AMKRTLKEVRENLLEATEASKTNLQYIRAKTAKNDHFESRRYIAAEILRDKKLADAYSGLEAVHNNYARVIGNDAITIRQRLEKMMMTDLKRKVKNWDEIYSAL
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