NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10001044

Scaffold Ga0211579_10001044


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10001044 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21638
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (23.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F005947Metagenome / Metatranscriptome385Y
F070647Metagenome123N
F077792Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0211579_1000104423F005947AGCAGMSKKIFWSDKASPNQKYHGGYYFRAFDLVKFMKLVEKEEGEVVGLEFEDNNVNVIIKADD
Ga0211579_1000104430F000126N/AMRDFKITRNKGEWYCVIVTDSYGTKYNNWFEHAHEANDWIYYIWENEEWFNHANSDELLGKAIQNCKEIDKNNNNLRKIL
Ga0211579_1000104431F070647N/AMNKRDELAIEIMQELDNKYNMNNMLSLDEYVYEYYDVLTTNEKTDCFEIIEMIF
Ga0211579_1000104432F077792N/AMYEVLEHWKQYKQEKDKLQQAKQLFEECGFQYKAKAKQEMDKFINKLVIKNGTTKY
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