NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10004896

Scaffold Ga0211579_10004896


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10004896 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9597
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F007052Metagenome / Metatranscriptome359Y
F016675Metagenome / Metatranscriptome245Y
F039176Metagenome164Y
F055786Metagenome138Y
F056894Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0211579_1000489610F007052N/ALTFWPSFDIIVVKDERRLTLMREKMKNNETYWVAKLSKKGEFLSSEIFESLEEARIWAMKEAKLLISHIEMLRMTNVGDIVVEIDKHFFGYEASSDEIIKNSVRVV
Ga0211579_1000489611F000615GAGGMCRIRAFYECSDGTMGYSEMVVSYDEDIAGLIRHWSVGGKRMVITEYFEV
Ga0211579_1000489613F039176GAGMKTMITGNAIDLSLNRSLEELISSYFEAHGAGIELDDDTRPEDIEAYFVLENYLADMGAI
Ga0211579_1000489615F056894GAGMNLGKRNGKMVGTTELNERMNGATVLARLTKWGMEAFKFVNETQAVNARDRWRHSVMNETLNFDIIHGSRVWYVRVSTR
Ga0211579_1000489620F055786N/AMICSYCYETQIRPKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKDGTWMDHKPEAIFGKKKHIPSPNFEKKKSIGAITDK
Ga0211579_100048966F016675AGGAGMRNFEVDYETTLPPWHTGHEKIEAEDLDTAREKFSSKHEAARIYKVTEVLYSERFATK
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