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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020472 Open in IMG/M |
| Scaffold ID | Ga0211579_10010988 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6107 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_132 | |||||||
| Coordinates | Lat. (o) | 31.4813 | Long. (o) | -159.088 | Alt. (m) | Depth (m) | 115 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006717 | Metagenome | 366 | Y |
| F007771 | Metagenome / Metatranscriptome | 345 | Y |
| F009558 | Metagenome | 316 | Y |
| F022974 | Metagenome / Metatranscriptome | 212 | Y |
| F032811 | Metagenome | 179 | Y |
| F056894 | Metagenome / Metatranscriptome | 137 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211579_1001098812 | F009558 | GGAG | MAYRHKSWEARHYWVNQFGIIEHDIFAHIPPQHYVVKWKEGYDRKEKHFDNKKEAQEFFRTVRKTATHFYRLVKWY |
| Ga0211579_1001098813 | F007771 | N/A | MKTIIYAKCIDKDVRLALYGMLEYAAVKLFPRRMKNTSIKLHLTHYDWDGEAMIEEGYTGRNPRNFKIVIDPYRIMKDDWDRELNYSEWVSKLLRTLAHEMVHVKQYIMGELTYKKGAMCWYGNEVGWMSAEEYFCSPHEVEAYGKEKWLQLGYTAVWNKIKNKEI |
| Ga0211579_100109886 | F022974 | AGG | MENETYYVAKLMKEGEFLSSEIFESLESARLWAMKETKLLVSDSYLKRCAADDIVVEIDEHFFGYECSVGELIRHNEREL |
| Ga0211579_100109887 | F056894 | GAG | MKLGMRNGKMVGTTELNERMNGATVLARLTKWGMEAFKFVNETSAMRARDRWRHSVMNETLSFDVIRGSRVWFVRVSERG |
| Ga0211579_100109888 | F006717 | AGGAG | MIELWIALVLTWYPSVERVVDKEFNSEKECWDYYETIIAPDTTLGEGKWGRQVLTAQDRRPDKNYFFKTNWDYPIRVYRGLNYDISKRGHDQVWLSCEPKYARVYNK |
| Ga0211579_100109889 | F032811 | GAG | MRIAKGCYFEQEEDEPIDPIRGKKTSVDKPNPIYYRKSELDDIPDDYATRIMNMRQSQKVIPEREVKTPDGFAVTIAYNKSGYQVIPEGDLKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |