NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10046357

Scaffold Ga0211579_10046357


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10046357 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2712
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004493Metagenome436Y
F005813Metagenome / Metatranscriptome389Y
F029594Metagenome188Y
F052260Metagenome / Metatranscriptome143N
F053978Metagenome140Y
F103094Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0211579_100463572F052260AGGAGGMFVILATKPLNDGTKGFRFNFFGKKGIVRQRKLQSNGIKFTKGDCMNAYHFGKTTIYTEQPVNKTTARKFCHLAG
Ga0211579_100463574F004493GGAMQNSVTKNNALDFTNDQWNQLIEGNGLLLMWFIEWNKRDKDNLVQIQDFFKQKYNISAGCDPWPMKNAKIALDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHVVRMD
Ga0211579_100463575F029594GAGGMLPDEMEAEKNRKLLLSQADTIEILKRNVRDLQEQLTAANIRIKQLKDDNWELRRKVTDAYQ
Ga0211579_100463576F053978AGGAGGMHINETTKQMIREIVVELFKEVASKQTFGVSDEVIQLDEHLHDWVGAKIDKYDVKVYGARLEERY
Ga0211579_100463578F005813AGGAGMKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPTKEAMSWFRWAHDCMLRGQYEDAKEMLRKGLIDDKESN
Ga0211579_100463579F103094GGAMTKKATEKLNIEVTLSSDNSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWQDDRAITRS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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