NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10175571

Scaffold Ga0211579_10175571


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10175571 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1253
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003122Metagenome / Metatranscriptome506Y
F017721Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0211579_101755712F017721GAGMSFREIWNGPSFLNRSDVARRMTARDNVGKHLKKPKKKHYEEHYRKDWDKDLWD
Ga0211579_101755713F003122GGAMIELLIFGLVLLSVICLWLLIEGRKNPKFLIWFIPLLLVLVSSTYMTYTAVQGYPKFEIPKKGLYLKHYIDEPNWIYVWVIDKERVPISYKIVYSKEVHNALEGVKEKVDEGKFMVLGEDITEEADGIQGEEKGESTDGYTIGGDISFYEWDYKSNMPQKEREK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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