NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10001179

Scaffold Ga0211625_10001179


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10001179 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28738
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004966Metagenome / Metatranscriptome417Y
F029240Metagenome / Metatranscriptome189Y
F087041Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0211625_1000117912F087041GAGGMKIIKYFLISFFVLSIVDGQEIQKGGETPTSFTYDEALDMLKARDKQWEEKIAKANTLIEFQKITISRSDSLVVELEEQANIDSLTLVAKDKQIELLKARDVANEKMVKLIEKKWYENEYIWLGIGFILGKL
Ga0211625_1000117917F004966AGGAMPFEDKKKSYMDTLFSISTLLKRWQVEIQKKDVSKNYMLKRLGQWIEHLESLRHEIMMEKDK
Ga0211625_100011795F029240AGGAMAKQRDIWRFNEDEWKVHISDNALLERVKKKFDLGNSQTIYYGKGSFNEETAWDIIVPDNKISKVKKFIKDNS
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