NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10001208

Scaffold Ga0211625_10001208


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10001208 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28361
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001711Metagenome / Metatranscriptome648Y
F020921Metagenome / Metatranscriptome221Y
F047687Metagenome / Metatranscriptome149N
F073577Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211625_1000120833F073577AGGAGMKVKMFNKEWEVNNPTYKEKRELWKINTMTFEGDKLNQDNYFKLLDKVEEISGLQPEDYVNQKGDPLNMANIDSLLQKIFLSYIGQSDDSKKE
Ga0211625_1000120847F020921AGGMALPKVPTTNVGIYNHLRVSTDCNETTNLSLASLCNGGDIGGIDHTFGGAGGPAKDFDVIGGTNNPITTTADSTNLYDDVIGVAPYNLANCIGGQYT
Ga0211625_1000120848F001711AGGAGMAKKIAEKAQEQAQSSVKMVEIKHLRSMKDEAGKDVSVVDWTESKDVDEAISQAEAQLVDAEAKVTELKADIVEYKKIKG
Ga0211625_100012085F047687GGAMKARDIANFTKTNWGQLASHARGLIVKDMNDGVMQNGIKKYNRNKASKEYAKKKATGALGKFRKSDRVTMLLSGETARRIRPEGKKDRAILVFERGDIVDANEKRGYVIADLSGKNRDKSVDFLQRIVDRNVKKYESKPVKIKIGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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