NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10043277

Scaffold Ga0211625_10043277


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10043277 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2838
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060815Metagenome132N
F095411Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0211625_100432772F095411AGGMTSTISKYKQVKITWWDICSSTESWIDEEDILNHDVSVCEDVGYIYKKTKDKLWLFTSYAEDEDGLEVGGLTCFPRKVIKKIEVIK
Ga0211625_100432775F060815GGGGGMRDKIKQVNELCRKDGIYQNEKGQKAVSSWSKIKYFRQVFGDELGFDTQIFDQEDYYICKCKILAYDPERVLATGHHKTFKKQGSYQLCETFAISRALSFFGILESDITSLEEYNMLGIPITRETKGAVNNSTNKGVDQIINDFKKCRNIYEYRRVRRINDPYIEQALTKHPSTYKSIMNIVESVEDKLNKQEKI
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Institute for Fundamental Biomedical Research
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