NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10051564

Scaffold Ga0211625_10051564


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10051564 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2530
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019821Metagenome227N
F026851Metagenome196Y
F081221Metagenome114N
F105104Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211625_100515642F019821AGGAGMTITNKTTLQELIDLGLFKAADIEKFNNKITRGADRAAKKALVEGTMSAIKALIESEAHEGNRYWSVKPAAHSLGFMTFIETDRGTILKALTKLTEEGFLTKVGLKKVDGKLTELDKTQVNAFQLRYIVTPVEEADAAVDEEGS
Ga0211625_100515645F026851AGGAMTQQQLRQLLKDPETLTPLEQAEVGRVRQAYFSAVAQETEAYIAAKEAYEEAKQFMDLQDPGEREVLMMLLKSMRDSERNMTIISTELEVHFGISA
Ga0211625_100515646F105104AGGAGMLHHIYYINPAGADNYMIVPFDEIKGTVAFLESLNHEVIAYWPIEEEA
Ga0211625_100515647F081221AGGAGMLTALYNLFILLTGFAAILCASLTAVALINLFSSSMLTYRDDKLLLAWALPSGLFFSGLLMVLLGWT
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