NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211547_10262529

Scaffold Ga0211547_10262529


Overview

Basic Information
Taxon OID3300020474 Open in IMG/M
Scaffold IDGa0211547_10262529 Open in IMG/M
Source Dataset NameMarine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)879
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_151
CoordinatesLat. (o)36.139Long. (o)-28.9598Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033460Metagenome177N

Sequences

Protein IDFamilyRBSSequence
Ga0211547_102625291F033460N/AMLETQISEGQHTSCHFCFDKFDGLLDKGLDLSKYELSITDPRTHFHVHYLNRDGDYIEKKVLDAYDINVDFPVIFFGRDLPYRDGFRCAYHLSTLKKLKSPFVRDVVKIIKLFKGNFIDIILASDFTQDGVIRDSHINIEIIPYMKNYNEIGEILKNNFDLPKLDYYKESFNDYDEKDFAWHIKIKLFRYIKKPLVKFYKTYPNNPYINYKHYDK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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