NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211541_10107724

Scaffold Ga0211541_10107724


Overview

Basic Information
Taxon OID3300020475 Open in IMG/M
Scaffold IDGa0211541_10107724 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1376
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.7738Long. (o)-16.9097Alt. (m)Depth (m)5 to 160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F003357Metagenome / Metatranscriptome492N
F007531Metagenome / Metatranscriptome349Y
F092187Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211541_101077241F092187N/ANYADEWWCMDCEHGPMDEKDDKCDRCGVKNSQYADEEMTGWEDEDIDSEVEEIW
Ga0211541_101077243F000302AGGAMIGTMTQDTKDRIAEMERQKIELENQLELLGYSGNLVRMHQIEEEIYEIDDTIRKLLP
Ga0211541_101077244F007531AGGAGMFKKIEKQILEFAKDTGLTERREIVHGTLYVKLHEEKECDHFHKVIRTFYKDQINNEGGVNMYAVGDEFAFDFVPADREAPVFTDEEEKGVWSEFAEEELLNNIPEDVDTMLDLEADAKEGR
Ga0211541_101077245F003357AGGAGGMTRNSWIVKQIYTDAKNNLGWLFKGILLAGGFVAGIKILMFFSVPKEIVFPVMWIAFILVMLYKWYSMKYDWKNDDKGYDRASKRYMKKLKGGK
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