NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211541_10173001

Scaffold Ga0211541_10173001


Overview

Basic Information
Taxon OID3300020475 Open in IMG/M
Scaffold IDGa0211541_10173001 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1062
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_152
CoordinatesLat. (o)43.7738Long. (o)-16.9097Alt. (m)Depth (m)5 to 160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003196Metagenome / Metatranscriptome501Y
F018550Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0211541_101730012F003196AGGMQLQKEILIDISDNATNSSAAQCDGLLLSGIVFPAAMTGTTVTFDFSFNGTTWYDVVETDGTEVSYSVSAGNVVRVDPSGWAFASPGFLRVTSGSSEAADRTLNLIFKQS
Ga0211541_101730013F018550N/AANSLKRLYDAHAPMIQPVLCVTPKQLLDLNKELIAGTVGITGAILPRDRNLAGIDIDVIVTPFGQIGMMVIDPNIMPANNAFILDFAFIQPVFTNIPGYGTVFVRDIDQNADAKVAKGIYMEMGYDFGPPSYHLKIAKVA
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