NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10061382

Scaffold Ga0211585_10061382


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10061382 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2712
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F012279Metagenome / Metatranscriptome282Y
F016675Metagenome / Metatranscriptome245Y
F022974Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0211585_100613822F016675N/AMRKFEVDYETTLPPWHTGHEKVEADDLDSVKEKFDRKHEAARIYKITEVLYDQRLVAS
Ga0211585_100613826F012279N/AMIMTERERVEGMLIENRLSDLKGIMKTLEAAETAVGHLRDRKWELVEELKELGHDFTATTEGMNVVLSASPSMRF
Ga0211585_100613827F000615GAGMCRIRCFYEGFDGKLSWAEIVMSYEDDIAGMVKHWSCGGKRMVTTEHIEMV
Ga0211585_100613828F022974N/AMENNETYYIARLTKKGKFLSSEIFETLESARLWAMKETKLLVSDTFLRKCKADDIVVEIDKYFLAYELDSEELFKNGIKVA
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