NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211503_10042393

Scaffold Ga0211503_10042393


Overview

Basic Information
Taxon OID3300020478 Open in IMG/M
Scaffold IDGa0211503_10042393 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2875
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_034
CoordinatesLat. (o)18.49Long. (o)39.8483Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F078839Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211503_100423931F078839AGGMKEERLISSIVMITFLFLWFIVLFTFGLLVYQTSSYQGQVDDLIKEN
Ga0211503_100423934F000245GGAMKTYSRFKEGSLDDKLDKYVSNEIKKRKLAKFPVNATDDYKMKKGKPAFTFPSPTGEMIIKVWLRDMAKIRGKAPKDMKAFNYELDDK
Ga0211503_100423936F002715AGGAMAEGKELQDVKLEVGLLKNEVEARGKQTEVLLSKLDLTTDKLQQLTVQIIKLNTRQEDHLKHDTTVRDELKILHTRIGDLHDKQLSAQKEIEQRLDRLDQYKSKLMGMIVVVGGALGVTVTLALHFL
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